v350
- v350 Preview 1 - 22 May 2017
- v350 Preview 2 - 29 May 2017
- v350 Final - 5 June 2017
Code changes:
- New CGI tool: the gene interactions viewer, hgGeneGraph (#13634). Max
- Final polish of barChart feature code; error checking for badly formatted custom tracks and hub files, simplify trackDb setting, add flexibility to custom track format (#18736). Kate
- Added support for HGVS m. and n. terms in position/search (#19423). Angie
- Support for collapsible sections in static pages (e.g. for tables of contents). Kate
- Allow to use Apache Basic Auth instead of our hgLogin (#19424). Max
- Moved logic of genePredToProt to library to allow CGIs to use it. Mark
- Removed unnecessary PSL creation from genePredToProt. Mark
- Ongoing work on new Composite Builder CGI tool: added mathWig track type and added sorting (#11630). Brian
- Fixed a handful of small bugs, such as hgc XSS (#19470). Galt
- Fixed bug where enabling GENCODE highlighting could cause duplication of some items. Mark
- Fixed name-overloading problem that broke VCF anchor variant selection (#18305). Angie
- Adding a new C module in src/lib for reading and writing comma-separated values. Jim
- New code for moving things from GEO data into a tagStorm format. Jim
- Making a new tagStormFromTab option that lets you specify manually every field you want at every level of the hierarchy rather than leaving it to the program to figure it out. Jim
Data changes:
- Added changes for the GTEX and TCGA barchart tracks (#19155 - #19350). Chris
- Added the Hoffman mappability hub as a native track (#19154). Chris
- Added NCBI RefSeq composite track for mm10, released to QA (#19450). Hiram
- Added mouse/hamster chainNet track, released to QA (#19513) Hiram
- Added crispr track for criGri1/hamster, released to QA (#19514) Hiram
- Expand and correct barChart format documentation, getting ready for feature release (#18736). Kate
- Ongoing work on hg38 knownGene (#19465). Brian