v366

Code changes:

• Fix bigBed searchIndex in composite (#21101). Brian
• Changes to support DECIPHER CNVs new data format (#21104). Jonathan
• Fix for the bedGraph format in assembly hubs (#21172). Brian
• Fix problem with composites acting like multiwigs in multi-exon mode (#21302). Brian
• Fixed links to mirbase (#20853). Christopher
• Added clear button to phyloPng (#17322). Christopher
• Fixed typos in mysql root password generation for gbic found bb Martin Marcher (See https://github.com/ucscGenomeBrowser/kent/issues/12). Christopher
• Let barChart urls be relative to trackDb directory. Brian
• Fix for a potential long/endless loop issue in hgTracks (#21462). Jonathan
• Small change to decipher build scripts for chrM fixup (#21104). Christopher
• Fixed bug that prevented multiple url and urlLabel trackDb settings, not for hubs. Christopher
• hgFakeAgp improved to work better with newer long-read assemblies to maintain contig names when constructing AGP files to annotate gaps (#21223). Hiram
• Allow gff3ToGenePred to turn more errors into warnings with -warnAndContinue. Mark
• Fixed bug that required hgGateway.dbDbTaxonomy to be explicitly set (#21403). Angie
• CIRM Initial Faceted-Search released. Galt
• CIRM Fixed cdwFile_filter and fullText search. Switches dynamically between facets and tags tables as needed. Galt
• CIRM Added a script to update the cdw full-text index. Galt

Data changes:

• CRISPR track for ce11 (#21517). Max
• New rmskJoined track for hg38 and mm10 (#18273). Christopher
• Repeat Masker joined track fixed to function correctly as a composite track with previous and current versions both available (#18273). Hiram
• Ensembl genes v92 has been installed on hgwdev (#21421). Hiram
• Work on gnomAD track on hg19 (#18951). Jonathan
• Work on DECIPHER CNVs and SNVs tracks (#21104). Jonathan
• Another change to the ccds database schema. Brian