- v425 Preview 1 - 13 Dec 2021
- v425 Preview 2 - 20 Dec 2021
- v425 Final - 10 Jan 2022
Code changes:
- Removed incognito mode feature since it was proving confusing, and was not being used (#28520). Max
- Implemented barChartMerge trackDb option for faceted bar charts. Jim
- Added the ability to map the assembly ids in a MAF to arbitrary strings (#28495). Brian
- Fixed message in needMem when signed int has overflowed. Example from hgLiftOver when user submitted a 3GB file (#28658). Galt
- Added support for a wildcard in domains in https cert check whitelist (#28657). Galt
- The exact hostName used is now passed to the cert verify callback for better logging. Galt
- Fixed compatibility with openssl 1.1 by removing obsolete field from structure in https.c (#28639). Galt
- Rearranged initDomainWhiteListHash() to be called by openSslInit() which is better and simpler (#28657). Galt
- Added some sites found in logs on RR, euro, asia official mirrors to the https cert built-in whitelist (#28657). Galt
- Fixed bug in hgTracks track searching on hubs where it was not looping through all available hubs to search, just the first N threads number of hubs. Chris
- Fixed and updated GB dockerfile, including update to Ubuntu 20, fixing compatibility with MaraDb, and sprucing up the docs. Max
- Changed linkedFeature support to have useItemRgb for all types that use these routines. This allowed bigPsl to use itemRgb. Brian
- Added new function to bypass normal font management to allow strings to be draw in arbitrary sized boxes - used for dynseq (#28499). Brian
- Checked in code from Michael Hillers group to support TOGA gene annotation. There is a possible track hub exploit in this code that needs to be addressed. Brian
- pslCdnaFilter now passes through PSLs without modification when -repsAsMatch is used. This allows for doing repeat content analysis filtering. Mark
- Better support for zoomed out views with barCharts. Stop making map-boxes for mouse-overs when they are a pixel or less and expanded sub-pixel scaling with more cases. Jim
- Fixed bug in the gnomAD v2.1.1 hg19 build script that was filtering out non-coding region variants from the all genome track (#28666). Chris
- Ongoing improvements to facets. Jim
- Ongoing improvements to wuhCor1 big tree build process. Angie
Data changes:
- (New) TOGA annotation track for mm10. Brian
- (Update) hg19 kgXref, kgAlias, and search index files to have modern gene symbols (#24125). Brian
- (Update) ARTIC v4.1 track for wuhCor1 (#28739). Angie
- Added 2022 JASPAR pwms to hgFixed (#28322). Biran
- Continued additions of GenArk assemblies. Hiram
- Continued updates to hgPhyloPlace. Angie