v432

Code changes:

• Fixed bug where track hubs attached to assembly hubs were not being searched (#29447). Brian
• "urls" trackDb statement now accepts commas in extra field (#29309). Max
• Changed trackDb html search to not require files end in ".html". Brian
• Fixed T2T assembly hub search on hgGateway (#29306). Chris
• Improved hubCheck subgroup validation (#29389). Chris
• Turned on use of chromAlias.bb file for GenArk hubs in place of the older style chromAlias.txt file (#29111). Hiram
• Added new style RepeatMasker track display to GenArk hubs, currently working with Brian and Robert Hubley to fix the bugs in the new style RepeatMaser track display (#29464). Hiram
• Made initial draft of a utility to get per-base nucleotide counts from a MAF file. Brian
• Initial draft of four base sequence logo display in hgTracks. Brian
• Fixed bug in chromAlias support in bigInteract type tracks (#29453). Brian
• Fixed bug in chromAlias support in hgFind (#29447). Brian
• barChart tracks now check gbdbLoc2 for stats files, which should resolve some issues for GBiB and GBiC users working with UCSC's barChart tracks (#29425). Jonathan
• Fixed minor problems with NOSQLINJv2 improvements in using sql safe functions, in hgTracks, hgTables, cgilib and hgc (#29274). Galt
• Ongoing work to support curated assemblies on assembly hubs. Brian
• Continued updates to hgPhyloPlace. Angie

Data changes:

• (New) DAP-G eQTLs to GTEx eQTLs track for hg38 (#29511). Matt
• (New) REVEL track for codons where transcripts are different (#29475). Max
• (New) ncbiRefSeq genes and cytoBand on nomLeu3 (#29509) Hiram.
• (Update) Natural selection track on wuhCor1 (#29478). Max
• (Update) Changed format of CAVIAR eQTLs track to be bigBed rather than bigInteract (#29511). Matt
• Continued addition of GenArk hubs. Hiram
• Ongoing improvements to wuhCor1 big tree build process. Angie